LUCA Phylogeny

From Palaeos

Life
`--LUCA
   |--Eubacteria
   `--Neomura
      |--Archaea
      `--Eukarya

[edit] Phylogeny of Basalmost Branches from LUCA

LIFE [Algae, Monera, Monodermata, Mychota, Prokaryota, Thallophyta, Unibacteria]
   |--Neomura
   |    |--Eukaryota
   |    `--Archaea [Archaebacteria, Archaeobacteria, Mendosicutes, Metabacteria, Sulfobacteria]
   |         |  i. s.: Ignicoccus [Ignicoccales]
   |         |         Caldivirga
   |         |         Natronomonas pharaonis
   |         |         Geoglobus
   |         |--Euryarchaeota
   |         |--Crenarchaeota
   |         `--‘Nanoarchaeum Huber, Hohn et al. 2002’ [Nanoarchaeota]
   |              `--‘*N. equitans Huber, Hohn et al. 2002’
   `--Eubacteria (see below tree for list of synonyms)
        |  i. s.: Neochlamydia Horn, Wagner et al. 2001VP
        |           `--*N. hartmannellae Horn, Wagner et al. 2001VP
        |         Selenihalanaerobacter Switzer Blum, Stolz et al. 2001VP
        |           `--*S. shriftii Switzer Blum, Stolz et al. 2001VP
        |         Thiomargarita namibiensis
        |         Aphanocapsa
        |         Thiomonas thermosulfata
        |         Halobacillus halophilus [=Sporosarcina halophila]
        |         Halothermothrix orenii
        |         Natroniella
        |         Dethiosulfovibrio marinus
        |         Photorhabdus
        |         Albidovulum Albuquerque, Santos et al. 2003VP
        |           `--*A. inexpectatum Albuquerque, Santos et al. 2003VP
        |         Thermodiscus Stetter 2003VP
        |           `--*T. maritimus Stetter 2003VP
        |         Amphibacillus
        |           |--A. fermentum Zhilina, Garnova et al. 2002VP
        |           `--A. tropicus Zhilina, Garnova et al. 2002VP
        |         Chrysiogenes [Chrysiogenaceae, Chrysiogenales, Chrysiogenetes]
        |         Oceanobacillus Lu, Nogi & Takami 2002
        |           `--*O. iheyensis Lu, Nogi & Takami 2002
        |         Sneathia Collins, Hoyles et al. 2002VP
        |           `--*S. sanguinegens Collins, Hoyles et al. 2002VP
        |         Phaeospirillum Imhoff, Petri & Süling 1998
        |         Roseospira Imhoff, Petri & Süling1998
        |           |--R. marina Guyonead, Mouné et al. 2003VP
        |           `--R. navarrensis Guyonead, Mouné et al. 2003VP
        |         Rhodocista Kawasaki, Hoshino et al. 1992
        |         Rhodospira Pfennig, Lünsdorf et al. 1997
        |         Roseospirillum Glaeser & Overmann 1999
        |         Methylobacillus Yordy & Weaver 1977
        |         Methylophilus Jenkins, Byrom & Jones 1987
        |         Methylovorus Govorukhina & Trotsenko 1991
        |         Empedobacter brevis
        |         Marinitoga
        |           |--M. camini
        |           `--M. piezophila
        |         Geobacillus
        |         Ammonifex degensii
        |         Ruminococcus productus [=Peptostreptococcus productus]
        |         Acetobacterium woodii
        |         Roseomonas
        |           |--R. gilardii Rihs et al. 1998
        |           |        |--R. g. ssp. gilardii
        |           |        `--R. g. ssp. rosea Han, Pham et al. 2003VP
        |           `--R. mucosa Han, Pham et al. 2003VP
        |         Chlamydophila
        |           |--C. abortus
        |           `--C. pneumoniae
        |         Archaeozoon acadiense
        |         Peptococcus niger
        |         Obruchevella parva Reitlinger 1948
        |         Salome hubeiensis Zhang 1986
        |         Polytrichoides Hermann 1974
        |           `--P. lineatus
        |         Nannococcus vulgaris
        |         Nitrocystis oceanus
        |         Beneckea natriegens
        |         Microcyclus flavus
        |         Pelodictyon clathratiforme
        |         Sphaerotilus natans
        |         Leptothrix
        |           |--L. cholodnii
        |           |--L. discophora
        |           `--L. lopholea
        |         Branhamella catarrhalis
        |         Thauera selenatis
        |         Thermothrix thiopara
        |         Curvularia lunata
        |         Siderocapsaceae
        |           |--Siderocapsa
        |           |--Naumanniella
        |           |--Siderococcus
        |           `--Ochrobium
        |         Lysobacter [Lysobacteraceae, Lysobacterales]
        |           `--L. enzymogenes
        |         Simonsiellaceae
        |           |--Simonsiella
        |           `--Alysiella
        |         Pelonemataceae
        |           |--Pelonema
        |           |--Achroonema
        |           |--Peloploca
        |           `--Desmanthos
        |         Baltisphaeridium
        |           |--B. centrocarpum
        |           |--B. gangolihatensis
        |           |--B. israelianum
        |           `--B. machaerophorum
        |         Schismatispaeridium kumauni
        |         Trachysphaeridium decorum
        |         Achromatium oxaliferum
        |         Lachnospira multiparus
        |         Calymmobacterium granuloma
        |         Bryantella Wolin, Miller et al. 2004VP
        |           `--*B. formatexigens Wolin, Miller et al. 2004VP
        |         Megasphaera
        |           |--M. inornata
        |           `--M. ornata
        |         Parapandorina raphospissa
        |--Aquificae
        `--+--Togobacteria
           `--+--Dictyoglomus thermophilum
              `--+--+--Actinobacteria
                 |  `--Exoflagellata
                 `--+--+--Clostridea
                    |  `--Halanaerobium [Halanaerobiales]
                    |       |--H. acetethylicum
                    |       `--H. praevalens
                    `--+--Pyrenomonas salina
                       `--+--Mastigocladus laminosus
                          `--Cyanobacteria

Pre-1985 taxa: Methanobacillus omelianskii
               Thermoanaerobium Zeikus, Hegge & Anderson 1979
                 `--*T. brockii Zeikus, Hegge & Anderson 1979
               Lampropedia

Eubacteria [Bacteria, Bacteroidaceae, Didermata, Endobacteria, Eubacteriales, Eurybacteria, Firmibacteria, Glycobacteria, Gracilicutes, Lipobacteria, Mastigomonera, Micrococcaceae, Myxomonera, Negibacteria, Photobacteria, Photomonera, Pimelobacteria, Posibacteria, Protobacteria, Schizomycetes, Schyzomycophyta]

* Type species of generic name indicated

[edit] References

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