Proteobacteria

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The Proteobacteria form the largest bacterial clade – well-recognised by molecular data, but short on morphological synapomorphies. They possess a large insertion in RNA polymerase and DnaK. While the genus Proteus is included within Proteobacteria, the division is not named after the genus. Instead, both are named after the Greek shape-changing god Proteus – in the case of Proteobacteria, to reflect the wide range of morphologies covered by the clade. Includes photosynthetic purple sulphur (e.g. Rhodocyclus) and non-sulphur (e.g. Rhodobacter) bacteria, intracellular parasites (e.g. Rickettsia), colonial formers of fruiting bodies (Myxococcales), and a wide range of heterotrophs, such as probably the most well-known bacterium of all, Escherichia coli. Divided by molecular data into five large clades, the α-, β-, γ-, δ-, and ε-proteobacteria. Examples – [Alphaproteobacteria] Rhodobacter, Rhizobium, Rickettsia; [Betaproteobacteria] Neisseria, Spirillum; [Gammaproteobacteria] Pseudomonas, Vibrio, Escherichia; [Deltaproteobacteria] Bdellovibrio, Myxococcus; [Epsilonproteobacteria] Helicobacter. Of the five classes, it seems likely that the α-, β- and γ-proteobacteria form a clade, with the α-proteobacteria sister to the other two (which form the Chromatibacteria in the tree below).

<==Proteobacteria [Thiobacteria]
   |  i. s.: Accumulibacter phosphatis
   |         Epulopiscium fishelsoni
   |         Bacteriovorax stolpii
   |         Zymomonas mobilis
   |--Deltabacteria
   `--+--+--Desulfurella acetivorans
      |  `--Epsilonproteobacteria
      `--Rhodobacteria
           |  i. s.: Piscirickettsia salmonis
           |--Chromatibacteria
           `--Alphabacteria

* Type species of generic name indicated

[edit] References

Berry, A., D. Janssens, M. Hümbelin, J. P. M. Jore, B. Hoste, I. Cleenwerck, M. Vancanneyt, W. Bretzel, A. F. Mayer, R. Lopez-Ulibarri, B. Shanmugam, J. Swings & L. Pasamontes. 2003. Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium. International Journal of Systematic and Evolutionary Microbiology 53: 231-238.

Cavalier-Smith, T. 2002. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. International Journal of Systematic and Evolutionary Microbiology 52: 7-76.

Gupta, R. S., M. Pereira, C. Chandrasekara & V. Johari. 2003. Molecular signatures in protein sequences that are characteristic of cyanobacteria and plastid homologues. International Journal of Systematic and Evolutionary Microbiology 53: 1833-1842.

Iizuka, T., Y. Jojima, R. Fudou, A. Hiraishi, J.-W. Ahn & S. Yamanaka. 2003. Plesiocystis pacifica gen. nov., sp. nov., a marine myxobacterium that contains dihydrogenated menaquinone, isolated from the Pacific coasts of Japan. International Journal of Systematic and Evolutionary Microbiology 53: 189-195.

Maher, M., R. Palmer, F. Gannon & T. Smith. 1995. Relationship of a novel bacterial fish pathogen to Streptobacillus moniliformis and the fusobacteria group, based on 16S ribosomal RNA analysis. Systematic and Applied Microbiology 18: 79-84.

Mori, K., H. Kim, T. Kakegawa & S. Hanada. 2003. A novel lineage of sulfate-reducing microorganisms: Thermodesulfobiaceae fam. nov., Thermodesulfobium narugense, gen. nov., sp. nov., a new thermophilic isolate from a hot spring. Extremophiles 7: 283-290.

Prescott, L. M., J. P. Harley & D. A. Klein. 1996. Microbiology (3rd ed.) Wm. C. Brown Publishers: Dubuque (Iowa).

Zhang, H., Y. Sekiguchi, S. Hanada, P. Hugenholtz, H. Kim, Y. Kamagata & K. Nakamura. 2003. Gemmatimonas aurantiaca gen. nov., sp. nov., a Gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. International Journal of Systematic and Evolutionary Microbiology 53: 1155-1163.

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