Eobacteria

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<==Eobacteria
   |--Deinococci [Deinobacteria, Hadobacteria] GH01a
   |    |--Deinococcus Brooks & Murray 1981VP SN03, GH01a (see below for synonymy)
   |    |    |--+--D. proteolyticus Brooks & Murray 1981VP GH01a
   |    |    |  `--D. radiophilus Brooks & Murray 1981VP GH01a
   |    |    `--+--+--D. geothermalis Ferreira, Nobre et al. 1997VP GH01a
   |    |       |  `--D. murrayi Ferreira, Nobre et al. 1997VP GH01a
   |    |       `--+--D. radiopugnans Brooks & Murray 1981VP GH01a
   |    |          `--+--*D. radiodurans Brooks & Murray 1981VP [=Micrococcus radiodurans] GH01a
   |    |             `--D. grandis (Oyaizu, Stackebrandt et al.) Rainey, Nobre et al. 1997VP (see below for synonymy) GH01a
   |    `--Thermaceae [Thermales] SN03
   |         |--Meiothermus Nobre, Trüper & da Costa 1996VP SN03, GH01a
   |         |    |--M. silvanus (Tenreiro, Nobre & da Costa) Nobre, Trüper & da Costa 1996VP SN03, GH01a (see below for synonymy)
   |         |    `--+--M. chliarophilus (Tenreiro, Nobre & da Costa) Nobre, Trüper & da Costa 1996VP SN03, GH01a (see below for synonymy)
   |         |       `--+--*M. ruber (Loginova, Egorova et al.) Nobre, Trüper & da Costa 1996VP (see below for synonymy) GH01a
   |         |          `--M. cerbereus Chung, Rainey et al. 1997VP GH01a
   |         `--+--Marinithermus Sako, Nakagawa et al. 2003 SN03
   |            |    `--*M. hydrothermalis Sako, Nakagawa et al. 2003 SN03
   |            `--Thermus Brock & Freeze 1969AL SN03, GH01a
   |                 |--T. oshimai Williams, Smith et al. 1996VP SN03, GH01a
   |                 `--+--T. filiformis Hudson, Morgan & Daniel 1987VP SN03, GH01a
   |                    `--+--T. thermophilus (ex Oshima & Imahori 1974) Manaia, Hoste et al. 1995VP SN03, GH01a (see below for synonymy)
   |                       `--+--+--T. brockianus Williams, Smith et al. 1995VP SN03, GH01a
   |                          |  `--T. igniterrae SN03
   |                          `--+--*T. aquaticus Brock & Freeze 1969AL GH01a
   |                             `--+--T. antranikianii SN03
   |                                `--T. scotoductus Kristjánsson, Hjörleifsdóttir et al. 1995VP SN03, GH01a
   `--+--Thermodesulfobium Mori, Kim et al. 2004VP MK03, IJSEM04 [Thermodesulfobiaceae]
      |    `--*T. narugense Mori, Kim et al. 2004VP IJSEM04
      `--Chlorobacteria C-S02
           |--+--Thermomicrobium Jackson, Ramaley & Meinschein 1973AL SY03, GH01c (see below for synonymy)
           |  |    `--*T. roseum Jackson, Ramaley & Meinschein 1973AL GH01c
           |  `--Sphaerobacter [Sphaerobacteraceae, Sphaerobacterales, Sphaerobacteridae, Sphaerobacterineae] GH01b
           |       `--*S. thermophilus GH01b
           `--Chloroflexi SY03
                |--+--‘Dehalococcoides ethenogenes’ SY03
                |  `--+--Anaerolinea Sekiguchi, Yamada et al. 2003 SY03
                |     |    `--*A. thermophila Sekiguchi, Yamada et al. 2003 SY03
                |     `--Caldilinea Sekiguchi, Yamada et al. 2003 SY03
                |          `--*C. aerophila Sekiguchi, Yamada et al. 2003 SY03
                `--+--Herpetosiphon Holt & Lewin 1968AL SY03, GH01b [Herpetosiphonaceae, Herpetosiphonales]
                   |    |--*H. aurantiacus Holt & Lewin 1968AL SY03, GH01b
                   |    `--H. geysericola Lewin 1970AL GH01b
                   `--+--*Roseiflexus castenholzii SY03
                      `--Chloroflexaceae [Chloroflexales] GH01b
                           |  i. s.: Chloronema Dubinina & Gorlenko 1975AL GH01b
                           |           |--*C. giganteum Dubinina & Gorlenko 1975AL GH01b
                           |           `--C. spiroideum Dubinina & Gorlenko 1975AL GH01b
                           |--Heliothrix Pierson, Giovannoni et al. 1986VP GH01b
                           |    `--*H. oregonensis Pierson, Giovannoni et al. 1986VP GH01b
                           `--+--Oscillochloris Gorlenko & Pivovarova 1989VP [Oscillochloridaceae] GH01b
                              |    |--*O. chrysea (Gicklhorn) Gorlenko & Pivovarova 1989VP SY03, GH01b (see below for synonymy)
                              |    `--O. trichoides (Lauterborn) Gorlenko & Korotkov 1989VP (see below for synonymy) GH01b
                              `--Chloroflexus Pierson & Castenholz 1974AL GH01b
                                   |--*C. aurantiacus Pierson & Castenholz 1974AL SY03, GH01b
                                   `--C. aggregans Hanada, Haraishi et al. 1995VP [=Chlorocrinus aggregans] GH01b

Nomina invalida: Chloroflexus aurantiacus var. mesophilus GH01b
                 Thermus lacteus GH01a

Deinococcus Brooks & Murray 1981VP SN03, GH01a [incl. Deinobacter Oyaizu et al. 1987 GH01a; Deinococcaceae, Deinococcales]

Deinococcus grandis (Oyaizu, Stackebrandt et al.) Rainey, Nobre et al. 1997VP [=*Deinobacter grandis Oyaizu, Stackebrandt et al. 1987] GH01a

Meiothermus chliarophilus (Tenreiro, Nobre & da Costa) Nobre, Trüper & da Costa 1996VP SN03, GH01a [=Thermus chliarophilus Tenreiro, Nobre & da Costa 1995 GH01a]

*Meiothermus ruber (Loginova, Egorova et al.) Nobre, Trüper & da Costa 1996VP [=Thermus ruber Loginova, Egorova et al. 1984] GH01a

Meiothermus silvanus (Tenreiro, Nobre & da Costa) Nobre, Trüper & da Costa 1996VP SN03, GH01a [=Thermus silvanus Tenreiro, Nobre & da Costa 1995 GH01a]

*Oscillochloris chrysea (Gicklhorn) Gorlenko & Pivovarova 1989VP SY03, GH01b [=Oscillatoria coerulescens Gicklhorn 1921 GH01b]

Oscillochloris trichoides (Lauterborn) Gorlenko & Korotkov 1989VP [=Oscillatoria trichoides (Szafer) Lauterborn 1915] GH01b

Thermomicrobium Jackson, Ramaley & Meinschein 1973AL SY03, GH01c [Thermomicrobia, Thermomicrobiaceae, Thermomicrobiales]

Thermus thermophilus (ex Oshima & Imahori 1974) Manaia, Hoste et al. 1995VP SN03, GH01a [=Flavobacterium thermophilum GH01a; incl. T. caldophilus (n. n.) GH01a, T. flavus (n. n.) GH01a]

* Type species of generic name indicated

References

[C-S02] Cavalier-Smith, T. 2002. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. International Journal of Systematic and Evolutionary Microbiology 52: 7-76.

[GH01a] Garrity, G. M., & J. G. Holt. 2001a. Class I. Deinococci class. nov. In Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria (Boone, D. R., R. W. Castenholz & G. M. Garrity, eds) pp. 395-420. Springer.

[GH01b] Garrity, G. M., & J. G. Holt. 2001b. Phylum BVI. Chloroflexi phy. nov. In Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria (Boone, D. R., R. W. Castenholz & G. M. Garrity, eds) pp. 427-446. Springer.

[GH01c] Garrity, G. M., & J. G. Holt. 2001c. Phylum BVII. Thermomicrobia phy. nov. In Bergey’s Manual of Systematic Bacteriology, 2nd ed., vol. 1. The Archaea and the Deeply Branching and Phototrophic Bacteria (Boone, D. R., R. W. Castenholz & G. M. Garrity, eds) pp. 447-450. Springer.

[IJSEM04] IJSEM. 2004. Validation list no. 95: Validation of publication of new names and new combinations previously effectively published outside the IJSEM. International Journal of Systematic and Evolutionary Microbiology 54: 1-2.

[MK03] Mori, K., H. Kim, T. Kakegawa & S. Hanada. 2003. A novel lineage of sulfate-reducing microorganisms: Thermodesulfobiaceae fam. nov., Thermodesulfobium narugense, gen. nov., sp. nov., a new thermophilic isolate from a hot spring. Extremophiles 7: 283-290.

[SN03] Sako, Y., S. Nakagawa, K. Takai & K. Horikoshi. 2003. Marinithermus hydrothermalis gen. nov., sp. nov., a strictly aerobic, thermophilic bacterium from a deep-sea hydrothermal vent chimney. International Journal of Systematic and Evolutionary Microbiology 53: 59-65.

[SY03] Sekiguchi, Y., T. Yamada, S. Hanada, A. Ohashi, H. Harada & Y. Kamagata. 2003. Anaerolinea thermophila gen. nov., sp. nov. and Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain Bacteria at the subphylum level. International Journal of Systematic and Evolutionary Microbiology 53: 1843-1851.

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Christopher 03:12, 31 October 2010 (UTC)

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